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CAS - Basic Sciences - Internal E-Newsletter [Vanderbilt University]

March 2019

From The Dean

Steve Hann, Professor of Cell and Developmental Biology and long-time member of the Vanderbilt community, died on February 27, 2019. Steve was a cornerstone of the research and education enterprises at Vanderbilt and his many accomplishments are celebrated below by his friend and colleague, Bill Tansey.

 

 

 

Stephen Hann, Professor of Cell and Developmental Biology and a mainstay of the Vanderbilt community for more than 30 years, died February 27 after a brief illness. He was 67.

Steve came to Vanderbilt as a freshly minted Assistant Professor in 1986, joining what was then the Department of Cell Biology. Previously, he had earned his Bachelor’s degree from the University of California, Berkeley, and his Ph.D. from the University of California, Riverside. After a brief postdoc at the Albert Einstein College of Medicine in New York, Steve went to train with Bob Eisenman at the Fred Hutchinson Cancer Research Center in Seattle. It was here, working side-by-side with Bob, that Steve laid the groundwork for his long and impactful career studying the oncoprotein MYC, the deregulation of which—we now recognize—probably underlies the etiology of all cancers.

Steve was a pioneer in the MYC field. When he went to the Hutch in 1982, the cellular MYC oncogene had just been cloned, but there was no understanding of how it caused cancer or of the extent to which it was involved in human malignancies. Importantly, there was also no way to track the MYC protein, something that hindered even the most basic characterization of its regulation and activities. Steve developed the first antibodies against a human MYC family member, and with this, typified what was a signature aspect of his career—the capacity to make ground-breaking discoveries himself while at the same time selflessly fueling discoveries by others. Steve’s reagents enabled him to characterize multiple isoforms of MYC, visualize its overexpression in cancer cell lines for the first time, and show that a leucine codon could unexpectedly act to initiate translation of MYC. His generosity with these reagents allowed others to move the needle further, defining MYC as a nuclear protein, revealing its modifications, exposing interaction partners, and tracking it in human cancer samples. Steve’s impact on the MYC field was immediate and impressive, and he continued in this vein for over 35 years, delineating critical functional elements within MYC, characterizing its metabolic stability, and setting the paradigm for how MYC uses different co-activators to achieve its multifaceted oncogenic functions.

At Vanderbilt, Steve epitomized every value we treasure: scholarly pursuit, collegiality, generosity, and service. During his time here, he served as Interim Chair and Vice Chair of Cell and Developmental Biology, and most recently as a highly-effective Director of Graduate Studies. Steve was passionate about mentoring and training, and his service as DGS was marked by reinvigoration of the curriculum and an emphasis on the practical skills required for a career in science. In 2006, Steve was awarded a training grant from the NCI, Integrated Biological Systems Training in Oncology, which has subsequently supported more than 40 pre- and post-doctoral trainees from nine basic and clinical departments across campus. He was Director of this program for a decade, and played a vital role in its successful renewal last year. Across the broader community, Steve was no less generous with his time and energy, frequently serving on Study Sections and advisory panels, and working with institutions across the country to help them develop and implement cancer-focused training programs. Steve’s impact on training and mentoring the next generation of scientists is as significant as that of his cancer research. Those who knew Steve well will miss his humor and his wisdom, and the no-nonsense way he approached everything he did. But the legacy he leaves, to those whose lives he touched with friendship, education, and through his research, is both profound and enduring.

Bill Tansey

Professor of Cell and Developmental Biology

 

Help us in welcoming the newest VBS members!

This month we’d like to welcome six new members to our Basic Sciences family. Syed Ahmed is a Research Assistant Professor in the Department of Cell and Developmental Biology (CDB). Rui Chen and Brinda Selvaraj, Research Instructors, recently started in the Department of Molecular Physiology & Biophysics (MPB). The Department of Biochemistry continues to grow with the arrival of Amanda Linkous (Research Associate Professor) and Courtney Lovejoy (Research Assistant Professor). Finally, Pharmacology also welcomed the arrival of Bartholomew Roland, Research Instructor.

Congratulations, trainees!

Join us in congratulating the following graduate students for being the recipients of fellowships: Zach Lonergan [Skaar lab, Pathology, Microbiology and Immunology (PMI)] from NIAID; Stephanie Dudzinski (Giorgio/J. Rathmell labs, Biomedical Engineering/PMI) from NCI; Shan Parikh (Knollman lab, Medicine) from NHLBI; Sheryl Vermudez (Niswender lab, Pharmacology) from NIMH; and Resh Gupta (Vago lab, Physical Medicine and Rehabilitation), Alexandra Sundermann (Velez Edwards/Edwards labs, Obstetrics and Gynecology/Medicine), and Eric Figueroa (Denton lab, Anesthesiology) from NIH.

Calipari captures the limelight

WLKY (Louisville) recently aired a segment on Erin Calipari (Pharmacology) and her research on addiction. Calipari shared research findings that include sex differences in how addiction manifests, and explained that she uses her famous name as a platform to communicate science to people who might not otherwise be exposed to it.

Bordensteins tag-team outreach efforts

Seth and Sarah Bordenstein (Biological Sciences) are the dynamic duo behind the efforts driving The Wolbachia Project, an integrative lab series that brings scientific research into classrooms all the way from middle school up through college. If you want a closer look into what this project entails and how it works, check it out here.

Crowe chases chikungunya into clinical trials

An RNA-coded monoclonal antibody against the chikungunya virus has recently become the first such biomolecule to enter a clinical trial. Researchers in the lab of James Crowe (Pediatrics) isolated the mRNA that encodes the antibody, and Moderna, Inc., a biotechnology company based in Cambridge, MA, encased it in a proprietary lipid nanoparticle.

Meiler celebrated as new endowed chair holder

A February 25 ceremony celebrated Vanderbilt University’s eight newest endowed chair holders. Amongst them, Basic Sciences member Jens Meiler was recognized as the new Stevenson Chair in Chemistry. Congratulations!

VINSE to seek community input on plan for future

Sandra Rosenthal (Chemistry) will be stepping down as head of the Vanderbilt Institute for Nanoscale Science and Engineering on June 30, 2019. Vice Provost for Research Padma Raghavan, along with the deans of the College of Arts and Science, Engineering, and Basic Sciences, will host a series of events with the VINSE community and stakeholders to plan for the future of the institute.

Why do you #Give4TheGold?

Bruce Carter, Professor of Biochemistry, has a short message for us: Vanderbilt University’s Giving Day is coming up on April 4. Together, we can make an immediate and meaningful difference for Basic Sciences. If you’re like me, you’re grateful for the commitment to excellence and supportive environment that exists at Vanderbilt. I hope you will join me and make a gift of any size to the Basic Sciences, as this will help talented students who are passionate about biomedical research and could not otherwise study at Vanderbilt, plus it will help our programs make further progress with innovations in teaching and discovery. Mark your calendars for April 4, bookmark this page, and join me in supporting the Basic Sciences!

 

New Discoveries

Defining a new form of DNA repair and differences in ATR activation

The lab of David Cortez (Biochemistry) has recently published a paper that describes a new DNA repair mechanism, and another one that elucidates the differences between the functions of ATR when it is activated by either ETAA1 or TOPBP1.

Reintegrating females into addiction studies

The lab of Erin Calipari has recently published a paper in Neuropsychopharmacology that looks at how the estrous cycle in mice affects addiction to cocaine.

Lipid homeostasis and lysophospholipid signaling

A recent paper from the Marnett lab (Biochemistry, Chemistry, Pharmacology) shows that two related lysophospholipases work together to maintain cellular levels of lysophospholipids constant.

A better way to predict synergy

The lab of Vito Quaranta (Biochemistry) has developed a new algorithm, MuSyC, that decouples synergistic potency from synergistic efficacy in drug combinations as a way to reduce biases and ambiguities.

Stressful results

The lab of MPB Professor Danny Winder has recently published that stress induces the activation of corticotropin releasing factor (CRF)-producing neurons and that adrenergic receptor signaling suppresses this activity in mice.

New mouse model allows study of neurotransmitter release

Heidi Hamm (Pharmacology) and colleagues have generated a new mouse model with defects in SNAP25, a SNARE protein,which decreased the inhibition of neurotransmitter exocytosis and led to physiological and behavioral phenotypes.

Gearing up to fight infection

As reported in a recent Nature paper, the lab of James Crowe cloned and sequenced the B cell receptors of up to 40 billion B cells from three individuals to determine their clonotypes, finding a surprising level of overlap.

Peptidase protects cell wall

The lab of Eric Skaar (Pathology, Microbiology and Immunology) has published in Cell Reports how a peptidase promotes bacterial survival and drug resistance in Acinetobacter baumannii.

A precision medicine potential against renal cell carcinoma

Mutations in the multifaceted methyltransferase SETD2 sensitize renal cell carcinoma cells to inhibitors of PI3K and AKT, the lab of Kim Rathmell (Medicine) has found out.

Antibacterial properties in breast milk

Steven Townsend (Chemistry) has recently published an editor’s choice conspectus that describes the multidisciplinary efforts that aim to characterize how human breast milk protects infants from infectious diseases.

Developing a lipid atlas for disease prediction

As lipids can be the “bellwether” of disease, the team of John McLean (Chemistry) has developed an atlas that can match individual lipid molecules to their shapes, which could one day help with the early diagnosis of many disorders.

Potential for new arrhythmia treatment

Jeffrey Johnston (Chemistry) and Bjorn Knollmann (Medicine) have found that the unnatural enantiomer of a fungal natural product, verticilide, can target ryanodine receptor type 2, which can cause irregular heartbeats.

 

External Funding Opportunities

NIH Guide
If you have not already done so, you are encouraged to subscribe to the NIH Guide email list, which provides a wealth of information on NIH grant programs. Subscribe here.

NIH S10 Instrumentation Program
Details of the NIH S10 Instrumentation Program for 2019 have been announced. The submission deadline is May 31, but you must submit a pre-application to the Office of the Vice Provost for Research by April 2.

NCI Cancer Moonshot
The NCI has recently updated funding opportunities through the Cancer Moonshot program. Details are here.

The Science-PINS Prize for Neuromodulation
The Science-PINS Prize is a $25,000 award that honors the work of a young scientist for outstanding contributions to research in neuromodulation. Deadline for nomination submissions is March 15.

Basic Experimental Studies with Humans
The NIH has recently announced the publication of new funding opportunities specifically for research involving human subjects that aims to understand the fundamental aspects of phenomena without an immediate or apparent application. See their FAQs here and keep on the lookout for these opportunities.

New NIH F33 grant opens for NIGMS-funded PIs
This F33 is targeted toward experienced scientists who wish to make major changes in the direction of their research careers or who wish to broaden their scientific background by acquiring new research capabilities. Standard application dates apply to this grant. Visit the program announcement for more details.

 

Limited Submission Opportunities

Information regarding limited submission opportunities may be found at the University website. You can also sign up to receive regular updates by email.

 

Internal Funding Opportunities

Second Round of Ancora Innovation Proposals
Ancora Innovation has announced a second round of pre-proposals for projects intended to move Vanderbilt discoveries toward possible clinical applications. The pre-application window is March 14-April 15. Apply here.

Vanderbilt O’Brien Kidney Center (VOKC) and Vanderbilt Center for Kidney Disease (VCKD) Pilot and Feasibility Awards
This award supports studies in any aspect of kidney disease research. Funds must be used for young investigators, investigators from other fields willing to bring their research expertise to nephrology, or for investigators currently in the nephrology area whose proposed research would constitute a totally new direction. Applications are due April 1.

VU Bridge Program
Primary Basic Sciences faculty with lapses in federal grant support are invited to apply for this program. The next submission deadline for Bridge/Realignment Grant funding is May 15. The instructions for submission of proposals have been completely overhauled and have been posted on the VBS website. It is critical that faculty who wish to apply follow the posted instructions.

Call for Nominations for the 2020 Chancellor’s Public Voices Fellowship
The purpose of this fellowship is to help disseminate the discovery and knowledge of Vanderbilt faculty to broader national and global audiences. The proposed projects must be at or near the promotional stage. The deadline for nominations is May 20.

 

 

Announcements

Professional Development Webinar Series
The National Center for Faculty Development & Diversity is hosting a series of webinars that are open to all faculty, postdoctoral fellows, and graduate students. Viewing sessions, to be held in the Sarratt Center room 363, and is sponsored by the Office of Inclusive Excellence. Two dates still remain: March 26 and April 15. Sign up at least 10 days in advance to guarantee a lunch!

Writing sessions for faculty and postdocs
The Office of Inclusive Excellence will be hosting a series of Faculty Writing Sessions throughout the semester. Registration is preferred. Postdocs welcome!

OpEd Project
The Margaret Cuninggim Women’s Center and the Program in American Studies are hosting a two-day workshop that is designed to help increase the range of voices and quality of ideas we hear in the world, particularly from women thought leaders. Learn more and apply by March 15.

CDMRP webinar series on funding
The Congressionally Directed Medical Research Programs has a webinar series on types of funding opportunities offered and strategies to increase the success of applications submitted to CDMRP programs. Four webinars are planned through May.

Discover Biomedical Research
Rising high school juniors or seniors interested in STEM careers are invited to apply to the Discover Biomedical Research summer program, hosted yearly by IMSD students. This two-week summer workshop introduces the participants to biomedical research through hands-on experiments, giving them a snapshot of what it is like to be a scientist. This program is free of charge. Deadline to apply is May 1, 2019.

Alert: Will share pretty images!
Have you ever gotten a brilliant or beautiful piece of data but have no one to share it with beyond your lab? Fear not, for Basic Sciences will now share your pretty images, whether they be microscopy, Western Blots, NMR spectra, or anything else in between. Submissions will be shared on social media along with a tidbit about what’s going on in each image. You can submit up to 5 images at a time here.

VBS Events on Twitter
Looking for the latest talks and seminars going on throughout the Basic Sciences? Follow us on Twitter for the latest on who’s presenting where.

Faculty – are you on social media?
Whether you’re on Twitter, Instagram, YouTube, or other, we want to connect with you! Submit your social media presences and increase your reach.

Events

Enabling Innovation Initiative
Kevin Ward, Executive Director of the Michigan Center for Integrative Research in Critical Care (MCIRCC), will present the next eI2 seminar, “Tapping Convergence Science as a Force Multiplier for Innovation and Entrepreneurship”, on Friday, March 15 at 3:00 PM in 202 Light Hall.

Family fun at 2019 Brain Blast
This year’s event will take place this upcoming Saturday, March 16 from 10 AM until 2 PM at the Nashville Public Library, Downtown Branch. Brain Blast is geared toward students in K-8th grade and their families and is open to the general public. If you know any curious kids who would love to touch a real brain, build a neuron, or interact with some creepy crawlies, bring them with you! See the News Channel 5 video.

TIPs Fair and Reception
Trans-Institutional Programs (TIPs), one of the major initiatives of the Academic Strategic Plan, are designed to serve as a catalyst to support new ideas, cutting-edge research, and the development of infrastructure by supporting emerging and existing trans-institutional centers and institutes. Provost Wente invites all community members to come learn more about this initiative at 4-6 PM on March 21 at the Wond’ry. Refreshments will be provided. Register here.

Reporting and responding to sexual misconduct
All faculty who have a role in training Ph.D. students and postdoctoral fellows are invited to attend a new one-hour workshop on Reporting and Responding to Sexual Misconduct, which has been designed through the combined efforts of Vanderbilt Project Safe, the Equal Employment Opportunity (EEO) Office, and the Title IX Office. Two iterations will be offered: an 8 AM breakfast meeting on March 25 in 1220 MRBIII, and a 12:30 PM lunch meeting on April 23 in 202 Light Hall. The workshop is designed to assist faculty in navigating their mandatory reporting obligations, and it is offered in furtherance of our institutional commitment to building a safer, more equitable educational environment. Advance registration requested.

Meeting to discuss space for research and education
A Town Hall on Trans-institutional Capital Planning will be held Thursday, March 28 at 9 AM in the Student Life Center. The results of a months-long campus wide inventory of space for science and the humanities will be presented along with models for enhancing the quality and quantity of space for research and education. Please mark this event on your calendars and make every effort to attend.

Faculty INSIGHTS Workshops
The next faculty workshop will take place on April 1 (Get Published: A Research and Publication Workshop for Non-Tenure Track Engineers and Scientists) at noon in Kissam C210.

Discovery Sciences Emerging Scholars Lecture
Timothy Downing, of UC Irvine, will give the next Emerging Scholars Lecture. He will present his research on the chemical and biophysical microenvironment and its effects on adult cell behavior and phenotype. Learn more on April 4 at 4 PM in 1220 MRBIII.

Epithelial Biology Center & Center for Stem Cell Biology Symposium
April 4 will bring about the EBC & CSCB Symposium, which will take place between 9:15 AM-3:45 PM in 214 Light Hall, and from 4-5 PM in 208 Light Hall. The symposium will feature talks by visiting scholars James Wells (Cincinnati Children’s Hospital Medical Center) and Hans Clevers (University Medical Center Utrecht), talks by Vanderbilt speakers, and a poster session. Register and sign up for a lunch here.

Vanderbilt Postdoctoral Association Symposium
This annual event highlights postdoctoral research from across different VU and VUMC fields and serves as a networking event for postdocs, faculty, and community members. Although the main event will take place from 9:30 am to 5 pm on April 9, note that a general audience lecture will also take place on April 8 at 6 PM in the Wond’ry. In registering, you can also nominate someone for Mentor of the Year or for the Postdoc Service Award. Registration is open until March 15!

VU Biomedical Postdoc Recruitment Event
Basic Sciences will be hosting a postdoc recruitment event on April 8-9, prior to the annual Vanderbilt Postdoctoral Symposium on April 9. Attendance for this event requires that you fill out the application by February 15, and is open to qualified senior graduate students from underrepresented groups (e.g. African Americans, Native Americans, Pacific Islanders, Hispanics, persons with disabilities or from disadvantaged backgrounds). You can check out the detailed schedule here.

AIMS 2019: Learn MALDI imaging mass spectrometry
The 8th Annual Advanced Imaging Mass Spectrometry Laboratory Course will take place on Tuesday, April 9 through Friday, April 12. This annual event is hosted by your friendly neighborhood resource faculty and staff, and will cover sample preparation, matrix application, instrumentation, and data processing. The event is open to non-Vanderbilt participants. Hurry, attendee and sponsor registration closes on March 22!

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Primary sympathetic neurons cultured in microfluidic devices. Cells are stained with neuronal marker TUJ1 (green) and nuclei are labeled with DAPI (blue). Submitted by Amrita Pathak, Research Instructor in the lab of Bruce Carter, through ArtLab. Enlarge Image

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