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CAS - Basic Sciences - Internal E-Newsletter [Vanderbilt University]

May 2019

Williams presented with Founder’s Medal

Each year during Commencement, Vanderbilt University recognizes one individual from each of its 10 schools with a Founder’s Medal. This year’s awardee from the Graduate School is Ian Williams from the lab of David Wasserman (Molecular Physiology and Biophysics, MPB). A California native, Williams has spent his years in the Wasserman laboratory studying vascular biology, and will continue to pursue his interests through a current postdoc at Stanford University. Congratulations for this phenomenal recognition, and good luck in your future endeavors!

Journal names Hubler paper as 2018 Paper of the Year

Kudos to Merla Hubler, an MSTP student in the lab of Alyssa Hasty (MPB), who is first author on the paper that The American Journal of Physiology: Cell Physiology has selected as the 2018 Paper of the Year!

Faculty promotions

Dean Larry Marnett and Associate Dean Alyssa Hasty recently joined with department chairs, vice chairs, and administrative assistants to celebrate the promotion of five faculty members. From CDB, Ken Lau and Rebecca Cook were promoted to Associate Professor and Andrea Page-McCaw was promoted to Professor. From Pharmacology, Carrie Jones was promoted to Associate Professor and Tina Iverson was promoted to Professor. Congratulations!

Johnson one of six honored with endowed chairs

Carl Johnson (Biological Sciences) has recently been named a Cornelius Vanderbilt Chair in the College of Arts & Sciences. Johnson is also a Stevenson Professor of Biological Sciences, has a secondary appointment in MPB, and is a member of VICB. Congratulations!

Biological Sciences appoints Eichman as new chair

Starting June 1, Brandt Eichman will serve as the new Chair of the Department of Biological Sciences! Also a Professor of Biochemistry and member of the VICB, Eichman has conducted excellent research at Vanderbilt since he first came in 2004. Still, he manages to enjoy his time out of the lab through a variety of activities including home brewing, playing music, and building sets for local public school theater programs. Join us in congratulating him!

Vanderbilt founding member of National Academies sexual harassment prevention collaborative

The National Academies of Science, Engineering, and Medicine have come together with 42 institutions of higher learning, including Vanderbilt University and VUMC, to found the Action Collaborative on Preventing Sexual Harassment in Higher Education. Faculty members Kathy Friedman (Biological Sciences) and Andrea Page-McCaw (Cell and Developmental Biology, CDB) will serve as the university’s delegates to the action collaborative, and will act as liaisons between it and the Office of the Provost and the Office for Inclusive Excellence.

Trainees travel to San Diego

The ASPIRE on the Road field trip took 12 trainees to La Jolla, San Diego, CA, to visit a series of pharmaceutical and biotech companies. Trainees had a chance to learn about the sector and to network in formal and informal settings.

Fogarty Fellowship for Fuseini

Hubaida Fuseini, recent Ph.D. and former mentee of Dawn Newcomb (Medicine), has been awarded the Fogarty Global Health Fellowship. This one-year, international postdoc fellowship funds clinically oriented research overseas at a site affiliated with the Vanderbilt-Emory-Cornell-Duke (VECD) Fogarty Consortium. Fuseini, who has family in Ghana, will spend a year at the Noguchi Memorial Institute for Medical Research in Accra.

Ortega awarded Pearson Fund Fellowship

Congratulations to Oscar Ortega, a graduate student in the lab of Carlos Lopez (Biochemistry), who has recently been awarded the William N. Pearson Fund Fellowship by the Department of Biochemistry. The Pearson Fund was established in 1969 by multiple donors to support graduate students and postdoctoral trainees who are studying international nutrition at the School of Medicine. The fund was established in memory of Dr. William Pearson, former Professor of Biochemistry.

Townsend earns 2019 Young Investigator Award

Our compliments to Steven Townsend (Chemistry), who was one of three faculty recognized by ACS Infectious Diseases. This recognition is for outstanding young investigators in the infectious diseases field who are within 10 years of their last training experience or at the Assistant Professor level.

Elion earns research fellowship

Congratulations to David Elion, of the Rebecca Cook (CDB) lab, who recently earned a research grant from the National Cancer Institute (NCI)!

Yohn, Sappington, Sanders recognized at VPA Symposium

The Office of Postdoctoral Affairs named Samantha Yohn, a postdoc in the lab of Jeff Conn (Pharmacology), Postdoc of the Year in recognition of her exceptional research scholarship. In addition, Rebecca Sappington (Ophthalmology and Visual Sciences) was recognized as Mentor of the Year and Anneke Sanders, lab of Irina Kaverina (CDB), was awarded the inaugural Service of the Year Award. Yohn, Sappington, and Sanders were recognized at the annual Vanderbilt Postdoctoral Association Symposium held in April.

Alvarado featured by Vanderbilt News

Graduating Ph.D. Gabriela Alvarado was recently featured by Vanderbilt News as part of a series spotlighting students graduating in 2019 and their impacts on the institution and the lives of those around them. Alvarado was a graduate student in the lab of James Crowe (Pediatrics) and now works full time as a staff scientist in IDBiologics, a biotech company Crowe founded in 2017.

Byndloss invited to Future Leaders Conference

The NIH Future Research Leaders Conference is a career-development opportunity for talented early-career biomedical and behavioral scientists from diverse backgrounds. Congratulations to Mariana Byndloss (Pathology, Microbiology, and Immunology, PMI), who was one of the ~30 applicants selected to participate out of the more than 120 who applied.

Huang earns Pearson Fellowship

Postdoc Hui Huang, from the lab of Chuck Sanders (Biochemistry), has been awarded a fellowship through the the William N. Pearson Fund, established in 1969 by multiple donors to support graduate students and postdoctoral trainees who are studying international nutrition at the Vanderbilt School of Medicine. The fund was established in memory of Dr. William Pearson, a former Assistant Professor of Biochemistry at the School of Medicine. Preference in awarding is first given to international students and then to students who are citizens of the United States. Congratulations to Huang!

Wilson appointed to ASGCT board of directors

The American Society of Gene and Cell Therapy has appointed Matthew Wilson (Medicine) to its board of directors. Wilson, who has been an active member of the ASGCT since 2004, will serve a 3-year term as an at-large director. Congratulations!

Medical societies honor VBS physician scientists

Italo Biaggioni (Medicine) has recently been inducted into the Association of American Physicians. In turn, the American Society for Clinical Investigation (ASCI) has awarded Jim Cassat (Medicine) and Jonathan Kropski (Medicine) with the 2019 Young Physician-Scientist Awards. Congratulations!

Quaranta illustration chosen for cover of Best of Biophysical Journal

The 2018 edition of the annual Best of Biophysical Journal depicts slivers from 5 illustrations, including one (second from left) from the lab of Vito Quaranta (Biochemistry). The full image had previously been featured by the journal’s blog.

Wisdom from Lopez, dogs

Carlos Lopez (Biochemistry) was featured in a Q&A in ASBMB Today. Read this Research Spotlight talking about Lopez’s background and what he has learned along the way (including from his own four-legged companions).

Undergraduates in BCB program celebrated for achievements

The undergraduate program in Biochemistry and Chemical Biology, headed by Brandt Eichman and Brian Bachmann (Chemistry), recently held its end-of-the-year symposium where students had the chance to present a poster or an oral presentation. In addition, three seniors and two juniors were recognized for their scholarly and academic achievements. The graduating seniors will be the first class to complete the program since its inception.

In the shoes of Elvis… and the rest of him, too

Vanderbilt professors Dale Edgerton (MPB), Nick Adams (Biomedical Engineering), and Bryan Shepherd (Biostatistics) recently embarked on a 100-mile, real-life Etch-a-Sketch journey to cycle the image of Elvis across Nashville, recording their ordeal with GPS devices.

Day of Discovery outreach with MNPS

A partnership between the Vanderbilt Center for Science Outreach and Metro Nashville Public Schools, Day of Discovery, brings middle school students into STEM research once a week. This past March, a group of 7th grade classes had full-day visits to the labs of Vivian Gama (CDB) and Marija Zanic (CDB), where they experienced the magic of TIRF microscopy and learned about microtubule dynamics.

New Discoveries

Getting more interpretation bang for your GWAS data buck

Genome-wide association studies (GWAS) are huge sources of data, but they can be difficult to interpret. In a recent Nature Neuroscience paper, Bingshan Li (MPB) and colleagues describe a new framework, integrative risk gene selector (iRIGS), that probabilistically infers risk genes driving GWAS signals.

Responding to metal starvation

In a pair of papers published in Cell Reports and Cell Chemical Biology, the lab of Eric Skaar (PMI) shows how Acinetobacter baumanii responds to zinc and iron starvation, and in the process identifies possible therapeutic targets against this infectious agent.

Glycine central to GPCR finger loop function

Seva Gurevich (Pharmacology) and colleagues have identified a critical role for a glycine near the beginning of the finger loop in mediating the GPCR-arrestin interaction.

Utilizing the membrane-binding domain of COX-2 to block the opening to the active site

Larry Marnett’s (Biochemistry) most recent paper, published in JBC, describes how fluorescent cyclooxgenase inhibitors that can be used as probes to diagnose inflammation and cancer bind to the enzyme’s active site. This paper was selected as an Editors’ Pick.

A new way to treat PTSD

Jeff Conn (Pharmacology), Craig Lindsley (Pharmacology), and colleagues found that positive allosteric modulators of M1 (a muscarinic acetylcholine receptor) may provide a novel treatment to facilitate exposure therapy for the treatment of post-traumatic stress disorder (PTSD).

Mechanistic insight into a topoisomerase II-targeting antibiotic

Gepotidacin is a novel drug that targets bacterial type II topoisomerases (gyrase and topoisomerase IV) and that has completed phase II clinical trials, but the details of its interaction with its targets were, until now, unknown. The lab of Neil Osheroff (Biochemistry) has recently characterized the mechanistic and structural interactions of the drug with Staphylococcus aureus gyrase.

The stuff extracellular vesicles are made of

A duo of papers published in Cell and Cell Reports presents a better way to isolate and characterize exosomes and non-vesicular particles. This work, led by Robert Coffey (Medicine), forces us to reexamine what we think is true about extracellular vesicles and the types of cargo they carry (or don’t).

Making the case for activating mutations in drug resistance

Joint work between the labs of Christine Lovly (Medicine) and Jens Meiler (Chemistry) has determined that a specific EGFR mutation can lead to drug resistance or to no effect depending on the activating mutation in EGFR-mutant non-small cell lung cancer, suggesting that drug resistance must be considered within the context of the resistance mutation, the drug, and the activating mutation, rather than on the resistance mutation and drug alone.

To be or not to be… bone or muscle

Animal model data from the lab of Jonathan Schoenecker (Orthopaedic Surgery and Rehabilitation) suggest that heterotopic ossification (HO), the formation of bone in soft tissues (e.g. muscles), depends on whether or not macrophages can clear microscopic amounts of nanohydoxyapatite from injured tissue before repair takes place.

Dendritic pruning may contribute to schizophrenia

Microglia, the resident macrophages of the central nervous system, help “sculpt” synapses during early postnatal development, but Ariel Deutch (Psychiatry and Behavioral Sciences) shows that overactive microglia might be responsible for excess “pruning” of the dendritic spines of pyramidal cells that is a hallmark of schizophrenia.

Pancreas size decreases following diabetes diagnosis

Vanderbilt researchers, including corresponding authors Al Powers (Medicine) and Dan Moore (Pediatrics), have found that the pancreas progressively decreases in size in children and teens newly diagnosed with type 1 diabetes.

Existence of HANA functional group confirmed

Jeff Johnston (Chemistry) and his lab report the isolation and characterization of the HaloAminoNitroAlkane (HANA), a new functional group that serves as an intermediate in an unusual synthetic pathway.

Combining big data with zebrafish biology

A collaboration between external and Vanderbilt faculty, including senior author Nancy Cox (Medicine), Eric Gamazon (Medicine), and Ela Knapik (Medicine), has used a predictive tool linking BioVU patient data and zebrafish biology to find new connections between genes and human disease, such as the genetically predicted decreased expression of GRIK5 associating with comorbid vascular and eye diseases.

 

External Funding Opportunities

NIH Guide
If you have not already done so, you are encouraged to subscribe to the NIH Guide email list, which provides a wealth of information on NIH grant programs. Subscribe here.

NIH S10 Instrumentation Program
Details of the NIH S10 Instrumentation Program for 2019 have been announced. The submission deadline is May 31, but you must have submitted a pre-application to the Office of the Vice Provost for Research by April 2.

NIH Director’s Early Independence Awards (DP5 Clinical Trial Optional)
Investigators wishing to forgo the traditional postdoc route after completing their doctoral studies may apply for this grant designed to accelerate their entry into research careers. Applications are due by September 13, 2019, at 5:00 PM local time of the applicant organization.

NIH Director’s Transformative Research Awards (R01 Clinical Trial Optional)
This FOA is a Common Fund initiative for scientists proposing “groundbreaking, exceptionally innovative, original, and/or unconventional research with the potential to create new scientific paradigms, establish entirely new and improved clinical approaches, or develop transformative technologies.” Applications must be submitted by September 20, 2019, at 5:00 PM local time of the applicant organization. More details here.

NCI Cancer Moonshot
The Cancer Moonshot program at the NCI has a variety of funding opportunities available. Details are here.

Basic Experimental Studies with Humans
The NIH has recently announced the publication of new funding opportunities specifically for research involving human subjects that aims to understand the fundamental aspects of phenomena without an immediate or apparent application. See their FAQs here and keep on the lookout for these opportunities.

New NIH F33 grant opens for NIGMS-funded PIs
This F33 is targeted toward experienced scientists who wish to make major changes in the direction of their research careers or who wish to broaden their scientific background by acquiring new research capabilities. Standard application dates apply to this grant. Visit the program announcement for more details.

 

Limited Submission Opportunities

Information regarding limited submission opportunities may be found at the University website. You can also sign up to receive regular updates by email.

 

Internal Funding Opportunities

VU Bridge Program
Primary Basic Sciences faculty with lapses in federal grant support are invited to apply for this program. The next submission deadline for Bridge/Realignment Grant funding is May 15. The instructions for submission of proposals have been posted on the VBS website. It is critical that faculty who wish to apply follow the posted instructions.

Call for Nominations for the 2020 Chancellor’s Public Voices Fellowship
The purpose of this fellowship is to help disseminate the discovery and knowledge of Vanderbilt faculty to broader national and global audiences. The proposed projects must be at or near the promotional stage. The deadline for nominations is May 20.

Small Cell Lung Cancer Pilot Projects
The Phenotype Heterogeneity and Dynamics in Small Cell Lung Cancer Center, Vanderbilt’s NCI Consortium research center, has announced a funding opportunity for innovative pilot projects focused on basic and translational research in SCLC. Projects involving computational and/or experimental methods (ideally in combination) will be considered. For more information and to apply, visit the REDCap survey. Applications are due by May 31. Please contact Amanda Linkous if you have questions.

Call for applications for the Visiting SEC Faculty Travel Grant
The Southeastern Conference (SEC) Visiting Faculty Travel Grant Program is intended to enhance collaboration between faculty at SEC universities, and provides faculty from one SEC member the opportunity to travel to another SEC campus to exchange ideas, develop grant proposals, and conduct research. Please note that these funds are limited to travel expenses. For more information and to apply, click here. Applications must be submitted by June 1, 2019 at 5:00 PM (CDT). Questions should be referred to the Office of the Vice Provost for Faculty Affairs.

Vanderbilt Prize Student Scholar
The Vanderbilt Prize Student Scholar is awarded to a female graduate student in the biomedical sciences at Vanderbilt (Ph.D. or MD/Ph.D. track) who has passed her qualifying exam and who has at least one full year remaining in her Ph.D. training. The awardee will receive a $1,000 cash prize and will be afforded the distinct opportunity of being mentored by the 2019 recipient of the Vanderbilt Prize in Biomedical Science, Christine Seidman, for a year. Nominations are due by June 7, 2019 at 5:00 PM. For more information and to apply, visit the website.

 

 

Announcements

The VBS website has a new look!
We’re very proud to show off our new Vanderbilt Basic Sciences website to you. From the redesigned homepage you’ll easily find links to our departments, centers, and cores; information for potential and current students and postdocs; video interviews featuring our very own faculty; news and discovery articles, which summarize the latest research happening at VBS; and a gallery of featured images.

Change in the hours of operation of the BRET Poster Printing Services
Beginning May 5, the BRET Poster Printing Services office hours will be 7:30 AM to 4:00 PM Monday through Friday. Please plan your poster printing needs to conform with the new hours of operation. Last-minute orders will only be accepted if scheduling permits. For questions, please email or call [(615)-343-4905] Mary Heath.

VGM Training Program open for applications
The Vanderbilt Genomic Medicine (VGM) Training Program is now accepting applications for the 2019-2020 postdoctoral fellowship. VGM includes a major focus in pharmacogenomics, precision phenotyping, medical informatics, and disease-based genomics. Applications are due by 5 PM on May 20. For more information, please visit the program page.

VICB Armstrong Prize application open
The Armstrong Prize, awarded to a graduate student who has conducted exceptional research in the area of chemical biology, will be presented at the 2019 Vanderbilt Institute of Chemical Biology (VICB) Student Research Symposium (information about the event below). The award comes with a $1,000 honorarium and a plaque. Applications will be accepted between April 30-June 1. All application materials must be emailed to Tia Repscher.

Camp Vandy looking for brainy volunteers
Each year, Vanderbilt hosts a summer day-camp for kids. Organizers are looking for volunteers to lead fun sheep brain activities with the campers on June 25 (a brain assembly “puzzle” with actual sheep brains for campers aged 5-6 and brain dissections for campers aged 7-11). Time slots are available from 10:15 AM to 3 PM. Sign up here by May 31. For more information, contact Kellie Williford

Do you work on a protein or protein family? Submit your info
The Program in the Molecular Basis of Genetic Diseases is a new trans-institutional initiative focused on understanding the relationships between genes and phenotypes. The program is looking to compile and maintain a list of genes and proteins already under investigation at Vanderbilt, and they need information on the proteins/protein families you study in your lab. Fill out the survey to help them identify opportunities to engage experts on campus (you!).

Chancellor’s Heart and Soul Award open for nominations
Nominations for this award, which celebrates the selfless dedication of staff members to the institution and the campus community, are now open. Given annually by the chancellor, each Heart and Soul Award includes a $1,500 cash prize and an engraved piece of wooden artwork, hand-crafted by artist Brenda Stein. The deadline to submit nominations is July 31.

NIH seeks input on increasing diversity among biomedical research faculty
The NIH is seeking broad input on institutional and/or programmatic approaches to advance inclusive excellence through institutional change. Any responses or comments will be anonymous and must be submitted via email through May 16.

Outlook/Exchange emails migrating to Office 365 cloud
Over the next several months, all Outlook/Exchange mailboxes of VU faculty, staff, and (most) graduate students will be migrated from on-premises servers to Microsoft Outlook Office 365 in the cloud, offering users a multitude of benefits. Click here to learn more. 

New VUMC connection to go live May 21
On Tuesday, May 21, 2019, a new Internet connection will go into service for VUMC, which currently shares an Internet connection with VU. This activity is part of continuing efforts to establish an independent information technology infrastructure for VUMC. Although there should be little (if any) noticeable impact, people working in VUMC space should consider the following:

  • Any process that relies on an uninterrupted internet connection will be disrupted for a short time around 10:00 PM on May 21. Depending upon fallback measures (e.g. local storage and/or other stopgap systems), this could result in loss of data or a stopped process. You may wish to avoid any such process that starts before or during this time.
  • On May 3, external IP addresses for VUMC machines will change to prepare for the network switchover. Data being transmitted outside VUMC will use a new IP range to transmit. Therefore, individual- or lab-licensed software or subscriptions that rely on a specific IP address or range may be affected. If you need to know what your new externally broadcasted IP will be, submit a Pegasus request and reference the CI: VEC-SOC-NAT.

For more information, visit the Data Network Separation webpage.

North pedestrian bridge to close for the summer
The north pedestrian bridge, which crosses 21st Ave. between MRBIII and Peabody, will be closed for routine maintenance from the week of May 13 to the end of July. The bridge will not be accessible for the duration of the project. The paved areas on VU campus will be utilized for mobilization during this time. The accessible paths will be similar to those available last summer, with signs indicating the paths. The bridge will open before students return in August.

We want YOU to submit your research images
Have you ever gotten a brilliant or beautiful piece of data but have no one to share it with beyond your lab? Fear not, for Basic Sciences will now share your images, whether they be microscopy, Western Blots, NMR spectra, or anything else in between. Submissions will be shared on social media along with a tidbit about what’s going on in each image. You can submit up to 5 images at a time here.

Check us out on social media
Looking for the latest news in Basic Sciences? Follow us on Twitter for the latest on who’s presenting where, and on Instagram to see the research our trainees are doing.

Faculty – are you on social media?
Whether you’re on Twitter, Instagram, YouTube, or other medium, we want to connect with you. Submit your social media handles and increase your reach!

Events

BRET Career Symposium
The BRET Annual Career Symposium, “Influencing Human Health with Your Ph.D.”, will be held between 9:00 AM and 5:00 PM on May 31. Eight speakers from diverse roles will present, plus keynote speaker Melanie Sinche. Attendees will be able to participate in career exploration workshops and Networking Huddles. The event includes lunch and a networking reception at the end. Register by May 24.

Informational meeting for MacArthur 100 & Change proposals
Vanderbilt is currently seeking concept proposals for the MacArthur Foundation 100 & Change competition. The MacArthur Foundation will award one $100 million grant for a project in any field or problem area that promises measurable progress in solving a critical problem of our time. Compelling proposals not selected for the $100 million grant may still be eligible for support. To learn more, attend an informational session on May 16 at 10:00 AM in the Central Library room 800-BB.

Writing sessions for faculty and postdocs
The Office of Inclusive Excellence hosted a series of Faculty Writing Sessions throughout the semester with one date remaining: May 17. Registration is preferred. Postdocs welcome!

Personalized Medicine Day
This year’s Personalized Medicine Day, hosted by VUMC, will be held from 8:00 AM to 4:00 PM on June 4. The event will feature a keynote talk by Elaine Mardis, co-Executive Director of the Institute for Genomic Medicine at Nationwide Children’s Hospital; basic science, clinic-based, big data, and big picture talks; and a poster session. To be considered for a poster, you must submit an abstract by May 20.

NCI Chemical Biology Consortium Symposium
The NCI will be hosting this symposium at the Student Life Center on July 10. This one-day event, geared towards lovers of cancer research, drug discovery, great music, or all three, will feature talks by leading researchers from the consortium, as well as a poster session. Register today.

Save the date for the Annual VICB Symposium
The 2019 VICB symposium will be held August 8 and will feature a keynote talk by Christopher Austin, Director of the National Center for Advancing Translational Sciences (NCATS) at the NIH. Registration will be open June 3-July 1, so keep an eye out for the link. Registrants must submit an abstract by July 19. Attendees do not need to be members to attend.

About this Issue’s Banner

This image was taken by Kensei Taguchi (lab of Craig Brooks, Medicine) at the Cell Imaging Shared Resource Nikon Center of Excellence. Shown is a super-resolution structured illumination microscopy (SIM) image of autophagosomes in kidney tissue using a RFP-GFP-LC3 reporter mouse, which can help visualize the formation of autophagosomes (green/red), and autolysosomes (red only).  Tissue sections from ischemic injured kidney were stained for GFP (green), RFP (red), KIM-1 (magenta) and DAPI (blue). Enlarge image

If you would like your image featured on our newsletter, please submit it here.

About the Newsletter

This monthly newsletter recognizes the achievements and latest discoveries of any trainees, faculty, and staff who aid in the basic research enterprise of the biomedical sciences at Vanderbilt University.

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