News From The Basic Sciences

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CAS - Basic Sciences - Internal E-Newsletter [Vanderbilt University]

September 2019

News

ASPET to recognize Guengerich

The American Society for Pharmacology and Experimental Therapeutics (ASPET) has selected Fred Guengerich (Biochemistry) as one of its inaugural Fellows. Fellows are selected for their meritorious efforts to advance pharmacology through their scientific achievements, mentorship, and service to ASPET. Read VUMC Reporter article.

 

Townsend named to group of Talented 12

Every year, Chemistry and Engineering News (C&EN) selects 12 individuals who it identifies as exceptional young scientists who are using “clever chemistry” to tackle some of the world’s hardest problems. This year, Steven Townsend (Chemistry) is one of the Talented 12, selected for his research on human milk oligosaccharides, a field that has historically been ignored.

 

Pettepher to be honored at annual AAMC meeting

Cathy Pettepher (Biochemistry) has been awarded the 2019 Alpha Omega Alpha Robert J. Glaser Distinguished Teacher Award on behalf of the American Association of Medical Colleges (AAMC) for her efforts in adopting a “more integrated approach to the basic sciences and a more collaborative approach to content organization and academic policy” at the School of Medicine.

 

Snider recognized by Genetics Society of America

The GSA has recognized graduate student Chloe Snider (Gould lab, CDB) as a recipient of the DeLill Nasser Award for Professional Development in Genetics. The award is given based on significance of research, productivity, and record of leadership and service through two selection rounds.

 

Monteggia appointed to IRSF Board of Directors

The International Rett Syndrome Foundation recently appointed Lisa Monteggia (Pharmacology) to its board. In her new role, Monteggia will further the organization’s goal of  advancing research on Rett Syndrome and connecting affected families to resources and support.

 

Ph.D. students don lab coats in Simple Beginnings ceremony

The Simple Beginnings ceremony is held each year to welcome and celebrate each new cohort of students in Vanderbilt’s nursing and biomedical Ph.D. programs within the School of Medicine and the College of Arts and Science. If you had relatives who were unable to attend, let them know they can watch the preceding guest session here, and the ceremony here.

 

Trainees earn fellowships

This month, graduate students Natalie Noll (Merryman lab, Biomedical Engineering) and Breanne Gibson (Shoenecker lab, Orthopaedic Surgery and Rehabilitation) received NHLBI fellowships, Elizabeth Moore (Jefferson lab, Neurology) and James Hutchison (Sanders lab, Biochemistry) received NIA fellowships, and Kelsey McNew (Moore lab, Pediatrics) received an NIDDKD fellowship. Postdoc Lauren Palmer (Skaar lab, PMI) also earned a K99/R00 from the NHLBI. Congratulations to all fellowship recipients!

 

Aspirnaut program celebrates its 10th anniversary

Aspirnaut, which brings rural high school students to Vanderbilt to conduct research for the summer, has marked its 10th year. Started by Billy and Julie Hudson, the program has hosted over 100 students, most of whom have graduated from high school and many of whom are pursuing STEM careers through college and beyond.

 

Basic Sciences faculty featured in Medicine


Manny Ascano
(Biochemistry), Erin Calipari (Pharmacology), Breann Brown (Biochemistry), and Rebecca Ihrie (CDB) and Jonathan Irish were featured in the latest issue of Vanderbilt’s Medicine magazine. Read on to learn more about your colleagues!

 

New Discoveries

p73 in cutaneous wound healing

Jennifer Pietenpol’s (Biochemistry) lab has found that p73 regulates basal keratinocyte function and is needed for timely wound healing.

 

Dynamics of catastrophe

Differences in tubulin heterodimer off-rates give rise to the different dynamics observed at the plus and minus ends of microtubules, according to the lab of Marija Zanic (CDB). This paper was featured on the cover of the Journal of Cell Biology!

 

How does salt increase blood pressure?

A recent collaboration led by Annet Kirabo (Medicine) has shed light on how isolevuglandin-protein adducts and a salt-sensing kinase increase blood pressure following sodium intake.

 

Mending the heart

The healing and repair phases that follow a heart attack are complicated by inflammation and scarring. The Mechanobiology Laboratory of David Merryman (Biomedical Engineering) has found a potential treatment to reduce their negative effects and improve cardiac function after heart attacks.

 

Learning regeneration from zebrafish

Research from the lab of Jim Patton (Biological Sciences) indicates that suppressing miR-216a, a miRNA, induces the differentiation and regeneration of Müller glia, the source of retinal regeneration in zebrafish.

 

Lazy cancer cells take path of least resistance

Motile cancer cells choose migration paths based on which ones require the least amount of energy to travel, says Cynthia Reinhart-King (Biomedical Engineering).

 

Regulating potassium in vision

The lab of Rebecca Sappington (Ophthalmology & Visual Sciences) has identified pressure-dependent changes in Kir and K2P channels in Müller glia, which are known to be altered in glaucoma and other retinal disorders.

 

 

How does the email quarantine system work?

Doug Schmidt (Computer Science) posed some issues of general interest to VUIT, which are addressed below:

  • Issue 1: It’s hard to figure out why something gets quarantined.

True. The explicit reason an email ends up in quarantine may often be intentionally obscured. If email hygiene systems were perfectly transparent, they could be easily defeated by nefarious actors. Emails in Quarantine fall into five categories:

  1. Policy – mail quarantined because it matched a policy set by a mail flow rule
  2. Bulk – mail identified as bulk mail
  3. Phish – mail identified as phishing mail
  4. Malware – mail quarantined because it contains malware
  5. Spam – mail identified as spam

With the exception of custom policies, we cannot entirely determine these categories for mail flow. Microsoft incorporates cloud-based AI, threat intelligence, collective activity, and behavioral learning across their worldwide service infrastructure to categorize and act on email. If we can collect common examples of emails inaccurately quarantined, we can work with Microsoft and our security team build and test rules or configuration settings that may allow messages of that type to bypass quarantine.

  • Issue 2: Marking quarantined emails to “release and allow sender” doesn’t work, i.e., they still get quarantined on replies and on new messages.

The “Release & Allow Sender” single-click link is optimized for Exchange Online mailboxes. Standard advice for mailboxes on premises is for the user to manually add the sender to their mailbox’s safe senders list. Once a user’s mailbox is migrated to O365, this link will work exactly as advertised – with one click.

  • Issue 3: Time delay in quarantine is also long and painful, which is impeding research productivity.

Quarantine digest emails are dispatched every 24 hours. This is not adjustable, but users can check their online quarantine at any time here.

 

Know Your Cores

Did you know that Basic Sciences boasts 19 cores that can help you with an assortment of needs and techniques? We’ll be featuring them each month so that you can get to know them. Maybe they can help you with that project you’ve been putting off… Just don’t forget to acknowledge them in your publications!

The Cell Imaging Shared Resource (CISR) is an institutional, fee-for-service, advanced microscopy resource available to any Vanderbilt researcher. The CISR maintains scheduled access to 13 light and 3 electron microscopes, provides expert imaging and image analysis training and assistance, and performs high-quality electron microscopy (EM) sample preparation. We are excited to bring light-sheet microscopy to the Vanderbilt community through a custom-built lattice light-sheet microscope made possible by a Trans-institutional Project (TIPs) grant collaboration between Vanderbilt Biophotonics, Physics, and Basic Sciences, and through an upcoming NIH S10 equipment grant that will allow us to purchase a Zeiss Lightsheet Z.1.

More information, including detailed equipment descriptions, rates, and staff contact information, may be found on our main website. Scheduling and training requests are done through iLab.

 

External Funding Opportunities

NIH Guide
If you have not already done so, you are encouraged to subscribe to the NIH Guide email list, which provides a wealth of information on NIH grant programs. Subscribe here.

 

NCI Cancer Moonshot
The Cancer Moonshot program at the NCI has a variety of funding opportunities available. Details are here.

 

Basic Experimental Studies with Humans
The NIH has recently announced the publication of new funding opportunities specifically for research involving human subjects that aims to understand the fundamental aspects of phenomena without an immediate or apparent application. See their FAQs here and keep on the lookout for these opportunities.

 

New NIH F33 grant opens for NIGMS-funded PIs
This F33 is targeted toward experienced scientists who wish to make major changes in the direction of their research careers or who wish to broaden their scientific background by acquiring new research capabilities. Standard application dates apply to this grant. Visit the program announcement for more details.

 

NSF predoctoral fellowships
The National Science Foundation’s Graduate Research Fellowship Program is open to doctoral students in a variety of STEM disciplines. The deadlines vary, but they cluster in the week of October 21. Make sure to reach out to your administrative officer at least one month before the deadline to begin working on your submission.

 

DARPA Young Faculty Award
The Defense Advanced Research Projects Agency (DARPA) Young Faculty Award (YFA) program will provide high-impact funding to elite researchers early in their careers to develop innovative new research directions in the context of enabling transformative Department of Defense capabilities. Applications must be submitted by November 19.

 

NSF Postdoctoral Research Fellowships in Biology
The NSF is soliciting applications for their Postdoctoral Research Fellowships in Biology (PRFB), which must be submitted by 5:00 PM (in the applicant’s local time zone) on November 19. This fellowship is meant for early-career postdocs, so doctoral students are invited to look this grant. Please visit their website to find out all eligibility requirements.

 

F series NIH fellowships for predoctoral and postdoctoral trainees
The NIH has a series of fellowships available to doctoral students and postdocs that can help you distinguish yourself and support your research. Visit their website to find out more about each type of fellowship. The next deadline is December 8.

 

Internal Funding Opportunities

Ancora Innovation funding for drug discovery
Ancora Innovation has a request for proposals open for research within all therapeutic modalities of the realm of drug discovery (small molecules, biologics, gene therapies, etc.). Letters of Intent are due October 8.

 

Call for TIPS Proposals
The Office of the Provost has issued a call for proposals for Trans-Institutional Programs, designed to support new ideas, cutting-edge research, and the development of infrastructure by supporting emerging and existing trans-institutional centers and institutes. Pre-proposals are due October 29. More information is available here.

 

Academic Pathways Postdoctoral Fellowships
The Academic Pathways Postdoctoral Fellowships program at Vanderbilt is designed to bridge fellows between academic training and entry-level faculty positions. For more information, visit their website. The application window will be open October 1 to November 1.

 

Call for Chancellor Faculty Fellows Nominations
The Office of the Provost has issued a call for nominations of associate professors to appointment as Chancellor Faculty Fellow, which provides research support of $40,000/year for two years. Nominations are due November 8. More information is available here.

 

VINSE pilot funding available
The Vanderbilt Institute of Nanoscale Engineering (VINSE) announced that funding is now available to provide Vanderbilt investigators the opportunity to utilize VINSE tools to obtain preliminary results for new research initiatives. Typical awards range from $500 to $2,000 for up to 6 months on a fiscal year basis and are designed to cover VINSE user fees. For more information about this funding opportunity or to apply visit the VINSE website.

 

Limited Submission Opportunities

Precision Medicine & Health Disparities Collaborative seeks pilot projects
The Precision Medicine & Health Disparities Collaborative (PMHDC) invites pilot projects that meet three key requirements: they have relevance to precision medicine, relevance to health disparities, and community engagement. You can request a pre-application consultation for guidance on preparing your application by September 30. For more information, please refer to the RFA.

 

Additional LSO information
Information regarding limited submission opportunities may be found on the University and Medical Center websites. You can also sign up to receive regular updates by email. These opportunities are not limited only to faculty. Make sure you check these opportunities out, as some are open to postdocs and graduate and medical students.

Announcements

Student images to decorate conference room
Our recent contest pitted eight spectacular images against one another in an effort to select three to display in our conference room, U1202 MRBIII, for a year. The winning images were taken by Nilay Taneja (Burnette lab, CDB), Caroline Cencer (Tyska lab, CDB), and Megan Rasmussen (Gama lab, CDB) and Nilay Taneja. Congratulations! The eight finalists were selected from the pool of images that have been submitted to us for sharing on our social media and on this newsletter. How can you submit your own images? Read right below.

We want YOU to submit your research images
We know all of you generate beautiful data, so help us show the world. Basic Sciences will now share your images, whether they be microscopy, Western Blots, NMR spectra, or anything else in between. Submissions will be shared on social media along with a tidbit about what’s going on in each image. You can submit up to 5 images at a time here.

School of Medicine Research Staff Awards
To recognize the invaluable efforts that research staff at all levels provide, VUMC grants three School of Medicine Research Staff Awards to Research Assistants, Senior Research Specialists, Research Nurses, Core Facility Managers, Core Research Assistants, and Research Support Staff from across the research enterprise. Nominations must be submitted by October 21.

Department of Energy to host two webinars
The DOE provides funding to research that address its core missions. The second of two sessions will focus on the DOE and the biological sciences and will be held September 26 at 2:00 PM. To learn more and to register, click here.

Levi Watkins Jr. Awards open for nominations
The Levi Watkins Jr. Faculty Award, which celebrates individuals within the School of Medicine who have fostered opportunities available to underrepresented minorities, and the Levi Watkins Jr. Student Award, which recognizes graduate and medical students who have fostered environments that are enriching, encouraging, and embracing, are open for nominations until September 27. The Levi Watkins Jr. Lecture will be given October 8 at noon in 208 Light Hall.

New ORCID iD requirement
Starting in fiscal year 2020, all individuals supported by research training, fellowship, research education, and career development awards from the NIH, the Agency for Healthcare Research and Quality (AHRQ), and the CDC must have ORCID iDs. For more information, you can visit the NIH announcement. Students, postdocs, and faculty members without an ORCID iD are encouraged to obtain one as soon as possible.

 

2020 Vanderbilt Prize open for nominations
The Vanderbilt Prize in Biomedical Science recognizes women who have made significant contributions to the science of medicine. Nominations are open to all women scientists in any area of basic or clinical research or practice at any institution and are open until September 30. The recipient of the prize will give a lecture at Vanderbilt, receive an honorarium, and mentor the Vanderbilt Prize Scholar, a promising woman undergoing her Ph.D. studies at Vanderbilt.

VU Writing Studio now in Light Hall
The Writing Studio and the BRET Office partnered up to bring you a Writing Studio satellite in 433 Light Hall. Drop in (no need for an appointment) on Fridays between 2:00-4:00 PM to get help with all your writing needs.

Interested in learning Python or refining your Python abilities?
The Python Working Group, a working group of the Digital Scholarship and Communications Office and the Jean and Alexander Heard Libraries, regularly hosts lessons on Python. The next cycle of classes for beginners will run on Tuesdays between October 15 and December 10 at 1:10-2:00 PM. API/web scraping with Python classes (for more advanced users) will also be held this fall on Fridays at 1:10-2:00 PM between November 1 and December 6. All classes are open to the Vanderbilt community.

Windows patches released- download the updates!
Marc Wozniak, IT Project Manager for Research, would like you to know about recent patches to the Windows operating system, which include two critical Remote Code Execution (RCE) vulnerabilities. These two vulnerabilities are “wormable,” which means that any future malware that exploits them could propagate from vulnerable computer to vulnerable computer without user interaction. Make sure you download the latest security updates! For more info, visit the Microsoft blog.

Vanderbilt style guide
What are the Do’s and Don’ts of using Vanderbilt’s brand on social media, logos, or merchandise? Visit the Vanderbilt Brand Style Guide for helpful information on a variety of subjects – there are even PowerPoint template slides you can download!

Check us out on social media
Looking for the latest news from Basic Sciences? Follow us on Twitter for the latest news on publications, awards, and presentations, and on Instagram to see the research our trainees are conducting.

Events

Webinar: Preparing an application to the NIH MOSAIC Program
The NIH’s Maximizing Opportunities for Scientific and Academic Independent Careers (MOSAIC) is designed to facilitate the transition of postdocs from diverse backgrounds into the biomedical research workforce. The NIH will be hosting an informational webinar about MOSAIC on September 24 from 12:00-2:00 PM CST.

Flulapalooza
Get your yearly flu vaccine for free at the annual vaccination event Flulapalooza. The tent will be located between Light Hall and the VA Hospital and will be open from 6:00 AM to 6:00 PM on September 25. Bring your Vanderbilt or VUMC ID!

Custodian Appreciation Event
Basic Sciences is hosting an event for the custodial staff in MRBIII, and we want you to join us! Come and chat with your friendly neighborhood custodian and enjoy some food and drinks on the house. Friday, September 27 at 4:00-5:00 PM in the 1st floor atrium of MRBIII.

Translational Research Forum
The 2019 iteration of this forum will take place on October 4 in the Student Life Center, starting at 8:00 AM. Registration is encouraged but not mandatory.

Looking for talented undergrads for your lab?
As of 2018, all Vanderbilt undergraduates are required to participate in an intensive learning experience called Immersion Vanderbilt, which can be fulfilled by conducting research in a lab. If you’re interested in hosting an undergrad in your lab, sign up for this networking opportunity! The Scientific Immersion and Mentorship Matching Event will be held October 14 from 4:00-6:00 PM at the Student Life Center. Represented labs will have a chance to present a poster or slides, or to simply chat with the attendees. Graduate students or postdocs are welcome to represent their labs.

MEGAMicrobe
The Vanderbilt Institute of Infection, Immunology & Inflammation’s yearly event is almost here! Come to the Granberry Elementary Gymnasium (5501 Hill Road, Brentwood, TN) on October 19 from 9:00 AM to 2:00 PM for some healthy, sciency, and free family fun. This event is geared for kids 14 and under.

Software Carpentry Event
The Vanderbilt Libraries and Research IT will be hosting a software carpentry event. The two-day boot camp will be held on October 24-25 and aims to help researchers get their work done in less time and with less pain by teaching basic research computing skills. Register here by October 20. No prior knowledge needed!

VCAR Science Day
The Vanderbilt Center for Addiction Studies (VCAR) is hosting the 3rd Annual Science Day at the Belcourt Theater on November 18. Speakers will include Olivier George from the University of California San Diego and Sara Jones from Wake Forest School of Medicine. Mark your calendars now.

About the Newsletter

This monthly newsletter recognizes the achievements and latest discoveries of any trainees, faculty, and staff who aid in the basic research enterprise of the biomedical sciences at Vanderbilt University. Archive.

About this Issue’s Banner

This image, taken by Romell Gletten (lab of Kevin Schey) at the CISR core, shows a bovine lens posterior suture region stained with wheat germ agglutinin-Alexa 647. You can appreciate the lens fiber cell tips and the lens capsule (the solid red perimeter at the top of the image). See larger view.

Catch Up on VU Basic Sciences News!

We regularly update our website with some of the latest VU Basic Sciences news stories. This is also where we post Discoveries – the latest published research by Basic Sciences faculty.

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